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SARS-CoV-2 mutations associated with COVID-19-related hospitalization

SARS-CoV-2 mutations associated with COVID-19-related hospitalization

 


The SARS-CoV-2 spike protein is required for the virus to invade the host cell and was therefore selected as the vaccine target for the currently available SARS-CoV-2 vaccine. However, the viral proteins that drive infectivity may differ from those that determine the severity of the disease. Dr. through collaboration of multiple departments. Lu Ping Chao, Pavitra Roychoudhury, Keith JeromeWhen Dan Gerati A broad sequence-based approach was taken to determine which SARS-CoV-2 protein may promote COVID-19-related hospitalization.These findings have recently been published Scientific Reports..

Astonishing three to four human viruses are discovered each year, but only half can be transmitted from person to person, and fortunately, very few of these infectious viruses are found worldwide. Is causing the consequences of a pandemic that is widespread inWool House 2012). Understanding the infectivity of SARS-CoV-2 is paramount to limiting or slowing the spread of the virus, but research on disease drivers is equally relevant in the treatment of infected individuals. To determine which protein produced by SARS-CoV-2 causes serious illness and hospitalization, the authors combined the usefulness of viral genomic sequencing with documented hospitalization status. Specifically, two clinical trials were conducted between April 2020 and March 2021 to collect SARS-CoV-2 sequence data from individuals who tested positive for the virus. The hospitalization status of these individuals was also taken as an indicator of the severity of the disease and was classified as either inpatient (needed to be hospitalized) or outpatient (not required to be hospitalized). From sequence data, 53 single nucleotide polymorphisms (SNPs) commonly known as mutations were identified in the following viral genes: nonstructural protein 2, endoRNASE, S-spomer protein, nucleocapsid, and open reading. Frame (ORF) 3a 8. Interestingly, the mutations found in nucleocapsid (4 SNP), endoRNASE (2 SNP), and ORF3a (1 SNP) were positively correlated with patient admission. However, as Dr. Zhao pointed out, “Peplomers are well known for their role in disease transmission, but peplomer mutations do not show similar associations.” These new discoveries are SARS. -Promote further investigation into how these mutations within the CoV-2 nucleocapsid, endoRNASE, and ORF3a proteins increase the severity of COVID-19 disease.

The researchers further analyzed one SNP in the endoRNASE gene and three SNPs in the nucleocapsid gene that were time-synchronized with the collected SARS-CoV-2 genome sampling (Figure). See SARS-CoV-2 The haplotype is “tggg”, the “t” in site 19389 is in the endoRNASE gene, and three sites: “g” in site 28881, “g” in site 28882, “g” in site 28883. was. It was included in the nucleocapsid gene. Using “tggg” as the reference haplotype, three variant haplotypes were frequently present in the sequence data: “caac”, “taac”, and “cggg”. Infrequent haplotypes were grouped under “rare”. Compared to other diverse haplotypes, the “caac” haplotype showed the greatest frequency increase in the sampled viral genome and was positively correlated with the hospitalization status of inpatients. These results suggest that specific mutations within endoRNASE and nucleocapsid proteins may regulate co-mechanisms for altering the severity of COVID-19 disease.

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