Health
Afro-TB dataset as a large-scale genomic data of Mycobacterium tuberculosis in Africa
Chakaya, J. othersThe 2021 World Tuberculosis Report is not very good news and is turning the tide to end tuberculosis. International Journal of Infectious Diseases (2022).
Buonsenso, D., Iodice, F., Biala, JS & Golletti, D. Impact of Covid-19 on tuberculosis care in Sierra Leone. Department of Respiratory Medicine 2767 (2021).
Google Scholar
Couvin, D., David, A., Zozio, T. & Rastogi, N. Macrogeographic specificity of the prevalent tuberculosis epidemic from sitvit2, an updated version of the Mycobacterium tuberculosis genotyping database. Infection, genetics and evolution 7231–43 (2019).
Google Scholar
Molla, KA, Reta, MA & Ayene, YY Prevalence of multidrug-resistant tuberculosis in East Africa: a systematic review and meta-analysis. pro swan 17e0270272 (2022).
Google Scholar
Chisompola, NK, Streicher, EM, Muchemwa, CMK, Warren, RM & Sampson, SL Molecular epidemiology of drug-resistant Mycobacterium tuberculosis in Africa: a systematic review. BMC infection 201–16 (2020).
Google Scholar
Satta, G. othersMycobacterium tuberculosis and whole-genome sequencing: how far are we from reaching its full potential? Clinical microbiology and infectious diseases twenty four604–609 (2018).
Google Scholar
Meehan, CJ othersWhole-genome sequencing of Mycobacterium tuberculosis: current standards and open questions. NATURE reviews microbiology 17533–545 (2019).
Google Scholar
Consortium, C. Data compilation relating the genomes of 12,289 M. tuberculosis isolates to quantitative resistance phenotypes to 13 antibiotics. pros biology 20e3001721 (2022).
Google Scholar
Walker, TM others2021 WHO Catalog of Mycobacterium tuberculosis complex mutations associated with drug resistance: Genotypic analysis. lancet microbe 3e265–e273, https://doi.org/10.1016/s2666-5247(21)00301-3 (2022).
Google Scholar
Lady, T. othersThe Tb Database: An Integrated Platform for Tuberculosis Research. Nucleic acid research 37D499–D508 (2009).
Google Scholar
Lew, JM, Kapopoulou, A., Jones, LM & Cole, ST Patients with tuberculosis – 10 years later. tuberculosis 911–7 (2011).
Google Scholar
Bhardwaj, A. othersTbrowse: Integrated Genomics Map of Mycobacterium tuberculosis. tuberculosis 89386–387 (2009).
Google Scholar
Phelan, J. othersIntegration of informatics tools and portable sequencing technology for rapid detection of resistance to antituberculous drugs. genomic medicine 111–7 (2019).
Google Scholar
Eaton, K. Ncbimeta: Efficient and comprehensive metadata retrieval from the ncbi database. Journal of Open Source Software Five1990 (2020).
Google Scholar
Allali, AE & Arshad, M. Mzpaq: A fastq data compression tool. Biology and Medicine Source Code 14, https://doi.org/10.1186/s13029-019-0073-5 (2019).
Andrews, S. othersFastqc: A quality control tool for high-throughput sequencing data. 2010 (2017).
Improving metagenomic analysis by Wood, DE, Lu, J. & Langmead, B. kraken 2. genome biology 201–13 (2019).
Google Scholar
Laamarti, M., Alaoui, Y., Fermi, R., Daoud, R. & Allali, A. The Afro-tb dataset: A large genomic data set of Mycobacterium tuberculosis in Africa, 1998. fig share, https://doi.org/10.6084/m9.figshare.c.6365466.v1 (2023).
Bolger, AM, Lohse, M. & Usadel, B. Trimmomatic: A flexible trimmer for illumina sequence data. bioinformatics 302114–2120 (2014).
Google Scholar
Li, H. Alignment of sequence reads, clone sequences, and assembly contigs using bwa-mem. arXiv preprint arXiv:1303.3997 (2013).
McKenna, A. others. genome research 201297–1303 (2010).
Chingolani, P. othersA program for annotating and predicting the effects of single nucleotide polymorphisms, snpeff: Snps in the genome of Drosophila melanogaster strain w1118. iso-2; iso-3. jump 680–92 (2012).
Google Scholar
Homolka, S. othersHigh-resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms. pro swan 7e39855 (2012).
Google Scholar
Cole, F. othersA robust snp barcode for typing Mycobacterium tuberculosis complex strains. nature communication Five1–5 (2014).
Google Scholar
Brand, M. othersEvolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage. natural genetics 47242–249 (2015).
Google Scholar
Call, TA othersMtbseq: A Comprehensive Pipeline for Whole-Genome Sequencing of M. tuberculosis Complex Isolates. Peer J 6e5895 (2018).
Google Scholar
Lee, H. othersArray alignment/map format and samtools. bioinformatics twenty five2078–2079 (2009).
Google Scholar
do Valle, Í.F. othersAn optimized pipeline of mutect and gatk tools to improve detection of somatic single nucleotide polymorphisms in whole-exome sequencing data. BMC bioinformatics 1727–35 (2016).
Google Scholar
Hadfield, J. othersNextstrain: Track pathogen evolution in real time. bioinformatics 344121–4123 (2018).
Google Scholar
Letunic, I. & Bork, P. Interactive tree of life (itol) v4: Recent updates and new developments. Nucleic acid research 47W256–W259 (2019).
Google Scholar
Nambrete, stingray othersPhylogenetic evaluation of drug-resistant Mycobacterium tuberculosis strains from Beira, Mozambique. tuberculosis 121101905 (2020).
Google Scholar
Huddleston, J. othersAugur: A bioinformatics toolkit for phylogenetic analysis of human pathogens. Journal of Open Source Software 6 (2021).
Sources 2/ https://www.nature.com/articles/s41597-023-02112-3 The mention sources can contact us to remove/changing this article |
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